BIoiNformatics Algorithms libRarY aka BINARY

The library is a collection of algorithms and data structures that are designed for modern C++ bioinformatics applications. You can use the library in your own projects or as a part of a larger project. The current project is developing and evolving, and changes will be made to the library as time goes on.

Index

• News

• Features

• Installation

• Algorithms

• Tools

• Documentation

• Acknowledgements

• Contributors

News

• New version of the library: 0.1.0

• New tool sv2nl is released

Features

• Embrace C++20 standard

• Supports modern C++ features

• Support concurrency and thread safety

• Priority is given to safety and clean design

• Hard to use wrongly

• Testing extensively

• Python bindings

Algorithms

The library contains algorithms for:

• Interval Tree

• VcfParser

• More to come

Tools

The library contains applications for:

1. sv2nl Mapping Structural Variants to Non-Linear Transcripts Variants

$ sv2nl -h

Acknowledgements

• https://github.com/samtools/htslib/blob/develop/htslib

• https://github.com/doctest/doctest

• https://github.com/jarro2783/cxxopts

• https://github.com/gabime/spdlog

• https://github.com/TheLartians/ModernCppStarter

Contributors

Thanks goes to these wonderful people (emoji key):

yangliz5 🚇